I modified my SGX using the amp on the gamesx website. Much like Chris Covell, i experienced image shearing after the initial mod, but only on my BVM 20F1U. I removed the amplifier as Chris suggested here, but i'm still getting the same problem.
Any idea what might be causing this?

I terminated every single BNC output. Still no dice.
I also get the exact same behavior when i use a t connector to combine the sync and green and set the bvm to use internal sync.
I tried using an LM1881, but i also got the same behavior.
I removed the LM 1881, and fed the pvm pure sync from pin 44, using this circuit:
http://console5.com/wiki/File:Hu6260_RGB_Amplifier_Schematic.png
Same issue.
I discovered that the shearing happens on all other channels as well! even when the supergrafx's input card isn't selected. This could be a clue. Note: this only happens with my supergrafx.
I don't have any other pc engine variants to test with.
Note: I get a nice and stable picture on my two PVM monitors.
More pics:
http://imgur.com/a/atmSd